Lineagea | Strains | NCBI Accession number | Mtb39A | Mtb39A | Mtb32A | Mtb72F | M72 | |||
---|---|---|---|---|---|---|---|---|---|---|
No. of aa changes | No. of aa/nt, position (pos) | % identity | ||||||||
Insertions | Deletions | Frameshifts | ||||||||
1 | T17 | PRJNA55273 | 3 | 99.23 | 94.37 | 96.79 | 96.65 | |||
T46 | PRJNA55875 | 3 | 99.23b | - | - | - | ||||
T92 | PRJNA55099 | 3 | 99.23 | 100 | 99.58 | 99.44 | ||||
EAS054 | PRJNA55133 | 117 | 1 nt, pos 811 | 1, pos 270-391 | 68.92 | 100 | 84.37 | 84.23 | ||
2 | 94_M4241A | PRJNA55095 | 0 | 100 | 100 | 100 | 99.86 | |||
210 (Mtb Beijing) | PRJNA42617 | 30 | 1 aa, pos 274 | 91.3 | 100 | 95.4 | 95.26 | |||
02_1987 | PRJNA55097 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
T85 | PRJNA55131 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
W-148 (Mtb. Beijing;MDR) | PRJNA182020 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
3 | - | - | - | - | - | |||||
4 | CDC1551 | PRJNA57775 | 0 | 100 | 100 | 100 | 99.86 | |||
C | PRJNA54359 | 0 | 100b | - | - | - | ||||
F11 | PRJNA58417 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
GM1503 | PRJNA55271 | - | - | - | - | - | 100b | - | - | |
H37Rac | PRJNA58853 | 62 | 1 nt, pos 922 | 1, pos 309–391 | 82.28 | 100 | 90.56 | 90.42 | ||
Haarlem | PRJNA54453 | 0 | 100 | 100 | 100 | 99.86 | ||||
KZN1435 (MDR) | PRJNA59069 | 0 | 100 | 100 | 100 | 99.86 | ||||
98R604INHRIFEM | PRJNA55399 | 0 | 100 | 100 | 100 | 99.86 | ||||
5 | CPHL_A (M. africanum) | PRJNA55877 | 4 | 1 aa, pos 274 | 98.72 | 100 | 99.3 | 99.16 | ||
6 | K85 (M. africanum) | PRJNA55879 | 3 | 2 aa, pos 162 | 1 aa, pos 274 | 98.48 | 100 | 99.17 | 99.03 | |
n.d. | SUMu001 | PRJNA51927 | 8 | 1 aa, pos 274 | 97.70 | 100 | 98.75 | 98.61 | ||
SUMu002 | PRJNA51925 | - | - | - | - | - | 100b | - | - | |
SUMu003 | PRJNA51931 | 2 | 99.49 | 100 | 99.72 | 99.58 | ||||
SUMu004 | PRJNA51933 | 2 | 1 aa, pos 274 | 99.23 | 100 | 99.58 | 99.44 | |||
SUMu005 | PRJNA51935 | 2 | 1 aa, pos 274 | 99.23 | 100 | 99.58 | 99.44 | |||
SUMu006 | PRJNA91937 | 2 | 99.49 | 100 | 99.72 | 99.58 | ||||
SUMu008 | PRJNA51941 | - | - | - | - | - | 100b | - | - | |
SUMu010 | PRJNA51945 | - | - | - | - | - | 100b | - | - | |
KZN605 (XDR) | PRJNA54947 | 0 | 100 | 100 | 100 | 99.86 | ||||
KZN4207 | PRJNA83619 | 0 | 100 | 100 | 100 | 99.86 | ||||
KZNR506 (XDR) | PRJNA47489 | 0 | 100 | 100 | 100 | 99.86 | ||||
KZNV2475 (MDR) | PRJNA47491 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
UT205 | PRJNA162183 | 0 | 100 | 100 | 100 | 99.86 | ||||
BTB05-552 | PRJNA51871 | 0 | 100 | 100 | 100 | 99.86 | ||||
BTB05-559 | PRJNA51873 | 0 | 100 | 100 | 100 | 99.86 | ||||
S96-129 | PRJNA51869 | 0 | 100 | 100 | 100 | 99.86 | ||||
CCDC5079 | PRJNA161943 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
CCDC5180 | PRJNA161941 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
CTRI-2 | PRJNA161997 | 0 | 100 | 100 | 100 | 99.86 | ||||
CTRI-4 (XDR) | PRJNA43175 | 3 | 99.23 | 100 | 99.58 | 99.44 | ||||
R1207 (MDR) | PRJNA46669 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
X122 (pre-XDR) | PRJNA46667 | 1 | 99.74 | 100 | 99.86 | 99.72 | ||||
NA-A0008 | PRJNA168604 | 6 | 98.47 | 100 | 99.58 | 99.44 | ||||
NA-A0009 | PRJNA168605 | 3 | 99.23 | 100 | 99.16 | 99.02 | ||||
HN878 | PRJNA46665 | 3 | 99.23 | 100 | 99.58 | 99.44 | ||||
RGTB423 | PRJNA162179 | 2 | 99.23 | 85.63 | 92.48 | 92.34 | ||||
RGTB327 | PRJNA157907 | 24 | 1 nt, pos 480 | 1 nt, pos 464 | 1, pos 139–155 | 93.91 | 100 | 96.67 | 96.53 | |
2 nt, pos 951 | 1 nt, pos 468 | 1, pos 314–316 | ||||||||
1 nt, pos 959 | 1 nt, pos 469 | |||||||||
1 nt, pos 470 | ||||||||||
1 nt, pos 475 | ||||||||||
Affected Strains; no (%) | 28 (67) | 3 (7) | 8 (19) | 3 (7) | ||||||
Average % identity | 98.08 | 99.55 | 98.71 | 98.57 |