Table 2 Comparison of the selected proteins with the PRED-TMBB database (http://bioinformatics.biol.uoa.gr/PRED-TMBB/) to evaluate extracellular epitopes
Protein | Epitope | Epitope Type | Out | Epitope outer part | |
|---|---|---|---|---|---|
Start- End | Initial Epitope Sequence | ||||
34 kDa outer membrane protein | 78–85 | YQQYDQNN | B-cell | 78–85 | YQQYDQNN |
111–134 | SATYNHTDVDGKNNFSKDDNGDRY | 116–133 | TDVDGKNNFSKDDNGDR | ||
179–190 | AAIQNDQDAVTA | 179–187 | AAIQNDQDA | ||
211–220 | GAFGQENQYG | 215–218 | QENQ | ||
237–253 | FVGNDGEADIKGNDLGE | 237–253 | FVGNDGEADIKGNDLGE | ||
281–290 | VKKSSYDTQT | 281–288 | VKKSSYDT | ||
31–39 | VPTPYLPVY | MHC-I/MHCII combined coverage | 31–39 | VPTPYLPVY | |
40–49 | FTGDVAGTFY | 40–49 | FTGDVAGTFY | ||
47–55 | AWGGNVNYF | 47–55 | AWGGNVNYF | ||
Omp38 | 35–46 | WQDSEHNNNKLT | B-cell | 35–46 | WQDSEHNNNKLT |
74–96 | EYNQVKGDLDGTGVQGAEYKQKT | 74–96 | EYNQVKGDLDGTGVQGAEYKQKT | ||
125–145 | GQTKTEFDGIYEDKKDTIGNA | 136–144 | EDKKDTIGN | ||
34–42 | TSDLITKNY | MHC-I/MHCII combined coverage | 36–42 | DLITKNY | |
43–51 | DSKFKPYVL | 43–51 | DSKFKPYVL | ||
49–57 | HLKPAAPVV | 49–56 | HLKPAAPV | ||
OmpW | 19–24 | VTSAAS | B-cell | 19–24 | VTSAAS |
27–35 | FSLKDGDGF | 27–35 | FSLKDGDGF | ||
61–71 | SVKENEQSKVG | 63–71 | KENEQSKVG | ||
80–87 | DNISDSNS | 80–87 | DNISDSNS | ||
120–133 | QWEAENTGLEADDV | 122–133 | EAENTGLEADDV | ||
154–165 | AGIPPKVDLQGK | 156–165 | IPPKVDLQGK | ||
265–292 | DGKSGAALERKTSSGDPKVDLEASDAIA | 265–292 | DGKSGAALERKTSSGDPKVDLEASDAIA | ||
173–181 | SATAKPAGG | 173–181 | SATAKPAGG | ||
323–330 | TITVNDAK | 323–330 | TITVNDAK | ||
19–27 | FTYDFNDKW | MHC-I/MHCII combined coverage | 19–27 | FTYDFNDKW | |
61–69 | GSAASARAW | 63–69 | AASARAW | ||
31–39 | GSVSYAHLK | 31–37 | GSVSYAH | ||
CarO | 44–51 | AEVGTTGY | B-cell | 44–51 | AEVGTTGY |
70–91 | NGGDISWTDDVSVNGTKYDLDM | 82–91 | VNGTKYDLDM | ||
134–170 | RIGNDETLSIDGKNYQQAVAGQEGGVRGKMNYENNIA | 134–170 | RIGNDETLSIDGKNYQQAVAGQEGGVRGKMNYENNIA | ||
193–202 | AYYTGNPKVQ | 196–202 | TGNPKVQ | ||
208–235 | LAPVNGNPTSAQDAVDKEENEIRNDDKY | 208–235 | LAPVNGNPTSAQDAVDKEENEIRNDDKY | ||
49–57 | TGYGGALLW | MHC-I/MHCII combined coverage | 49–56 | TGYGGALL | |
OmpA | 36–56 | QDSQHNNGGKDGNLTNSPELQ | B-cell | 36–56 | QDSQHNNGGKDGNLTNSPELQ |
78–100 | EYNQVKGDVDGASAGAEYKQKQI | 78–100 | NQVKGDVDGASAGAEYKQKQ | ||
134–153 | FDGVNRGTRGTSEEGTLGNA | 134–153 | FDGVNRGTRGTSEEGTL | ||
172–181 | RATYNADEEF | 172–181 | YNADEEF | ||
37–45 | TSDLITKNY | MHC-I/MHCII combined coverage | 37–45 | TSDLITKNY | |
46–54 | DSKIKPYVL | 46–54 | DSKIKPYVL | ||
50–59 | RVFATITGSR | 50–57 | RVFATITG | ||
putative porin | 24–43 | VQGQSEYVDTTANDKNFTGD | B-cell | 31–43 | VDTTANDKNFTGD |
78–85 | YQQYDQNN | 78–85 | YQQYDQNN | ||
111–134 | SATYNHTDVDGKNNFSKDDNGDRY | 116–133 | TDVDGKNNFSKDDNGDR | ||
179–180 | AAIQNDQDAVTA | 179–188 | AAIQNDQDAV | ||
211–220 | GAFGQENQYG | 214–218 | GQENQ | ||
237–253 | FVGNDGEADIKGNDLGE | 237–253 | FVGNDGEADIKGNDLGE | ||
281–290 | VKKSSYDTQT | 281–288 | VKKSSYDT | ||
31–39 | VPTPYLPVY | MHC-I/MHCII combined coverage | 31–39 | VPTPYLPVY | |
40–49 | FTGDVAGTFY | 40–49 | FTGDVAGTFY | ||
46–54 | QAWGGNVNY | 46–54 | QAWGGNVNY | ||