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Table 1 List of top 50 up regulated genes (sorted by PMA 24 hrs)

From: Identification of novel transcriptional regulators involved in macrophage differentiation and activation in U937 cells

   Illumina array fold change
Ref.Seq. Gene Symbol PMA6 PMA12 PMA24 PMA32 LPS VitD3
NM_014220 HL6 20.6 88.5 96.3 96.5 128.2 1.1
NM_005368 MB 4.3 27.8 90.5 110.5 96.2 7.7
NM_000582 BNSP 7.6 31.1 84.1 118.1 110.9 1
NM_021796 PLAC1 1.8 11.8 34.6 39.1 34.3 -1.1
NM_002423 MMP7 1.9 2.7 29.9 61.4 36.5 -1.4
NM_002922 RGS1 15.9 25.6 28.6 26 29.9 -1.1
NM_018993 RIN2 9.5 18.2 23.2 18.9 14.4 1
NM_001955 EDN1 42.9 22.9 21.2 22.9 85.4 1
NM_000265 NCF1 3.4 11.2 18.6 21 17.8 3.8
NM_001332 CTNND2 1.5 4.9 15.7 20.4 12.8 1.1
NM_016270 KLF2 15.5 11.6 13.9 15.2 9.8 -1.3
NM_002167 ID3 1.8 3.4 11.9 6.2 38.9 2.7
NM_002203 CD49B 2 7 10.5 9.3 6.9 1
NM_000014 A2M 4.1 7.4 10.4 11.1 11.5 1.1
NM_001401 EDG2 4.4 9.2 10.3 8.8 6.6 -1.8
NM_152591 CCDC63 2.5 7.1 9.9 9.8 10.6 -1.1
NM_030820 COL20A1 1.2 2.8 8.8 7.7 7.4 -1.1
NM_004994 MMP9 2.4 6 8.4 10.1 8.3 -1.2
NM_004926 BERG36 6.5 8.1 8.2 7.7 9.9 -1.4
NM_001200 BMP2 15.2 13.6 8.1 4.1 10.3 -1.2
NM_015271 RNF86 2.6 5.5 8.1 10 7 -1
NM_021952 ELAVL4 7.3 8.1 8 7.9 6.8 -1.1
NM_001706 BCL6 7.1 8.3 7.6 7.6 19.5 1.6
NM_001565 CXCL10 1.4 1.5 7.5 12.6 23.4 -1
NM_005627 SGK 3.4 4.9 7.5 6.6 13 -1
NM_007351 ECM 3.3 7.2 7.3 8.4 8 1.1
NM_206827 RASL11A 1.2 4.3 7.2 6 4.5 1.2
NM_002983 CCL3 8.9 8.9 7.1 8.2 197.3 1.4
NM_003294 ALPHAII 2.4 4.6 7.1 9.4 8.6 1.1
NM_153370 PI16 1 1.6 6.9 10.3 6.9 1
NM_003986 BBH 1.7 3 6.8 9.8 6.6 -1.2
NM_025113 C13ORF18 2.5 4.7 6.7 5.3 14.8 1.3
NM_005449 TOSO 3.7 8.4 6.4 6 7 1.4
NM_000389 P21 2.4 4.2 6.1 6.1 11.8 1.3
NM_001001437 CCL3L3 8.5 7.8 6 6.1 187 1.2
NM_001268 CHC1L 1.6 3.4 6 6.8 4.7 1.1
NM_206939 CD20L4 -1.2 2.8 5.9 8.3 6.9 -2
NM_004615 A15 1.2 3.5 5.8 6.3 4.8 -1.3
NM_016134 PGCP 1.4 3 5.7 7.1 5.4 -1.1
NM_005211 CD115 2.2 5.6 5.6 4.8 5.1 1.7
NM_147130 LY117 2.8 5.3 5.6 4.5 5.3 1.2
NM_013445 GAD 1.1 3.9 5.6 5.9 5 -1.2
NM_007079 PRL3 1.6 3.9 5.6 7.9 7.1 -1.2
NM_032199 ARID5B 7 5 5.5 5.7 6.6 -2.1
NM_001257 CDH13 1 2.7 5.5 5.6 5.1 -1.2
NM_001017998 GNG10 2 4.3 5.5 7.4 5.3 1.5
NM_005842 HSPRY2 4.3 5.8 5.4 5.2 4.1 -1
NM_016257 HLP4 1.2 2.7 5.4 7 5.3 1.2
NM_052815 DIF2 6.8 5.1 5.3 4.7 157.7 1.1
NM_014862 ARNT2 2.5 5.4 5.3 4.8 5.3 -1
  1. The column designation indicates different time points of differentiation with PMA (6 hrs, 12 hrs, 24 hrs and 32 hrs), VitD3 (24 hrs) and subsequent activation of PMA differentiated cells (24 hrs) by LPS (2 hrs). The numbers denote fold change after normalization of Illumina array data. The order of genes was sorted by PMA 24 hrs sample in descendent manner.