| |
Illumina array fold change
|
Real time PCR
|
---|
| | | | |
Ct
| |
RQ fold *
| |
---|
Ref.Seq
|
Gene Symbol
|
PMA24
|
LPS
|
VitD3
|
Cont
|
PMA24
|
LPS
|
VitD3
|
---|
Cytokines and Chemokines
|
NM_002983
|
CCL3
|
7.1
|
197.3
|
1.4
|
26
|
27.9
|
776
|
1.6
|
NM_000594
|
TNFa
|
3
|
121.4
|
1.6
|
29
|
13.9
|
119.4
|
1.1
|
NM_000584
|
IL8
|
3.7
|
82.9
|
2.3
|
25
|
1.2
|
222.9
|
3.2
|
NM_000575
|
IL1A
|
1.1
|
98.7
|
-1
|
35
|
5.7
|
2195
|
2.3
|
NM_000576
|
IL1B
|
2.9
|
75.2
|
1.1
|
26
|
2.5
|
415.9
|
0.7
|
NM_004591
|
CCL20
|
-1
|
47.6
|
1.1
|
30
|
2.1
|
724.1
|
0.9
|
NM_000600
|
IL6
|
3.7
|
29.9
|
2.1
|
28
|
4.6
|
157.6
|
3.5
|
NM_001565
|
IP10
|
7.5
|
23.4
|
-1
|
30
|
97
|
222.9
|
0.7
|
NM_002089
|
CXCL2
|
1.2
|
16.5
|
1.1
|
28
|
0.4
|
48.5
|
1.7
|
NM_002984
|
CCL4
|
1.1
|
1.7
|
1.1
|
35
|
52
|
80,000
|
1.9
|
Surface molecules
|
NM_004233
|
CD83
|
1.8
|
10.4
|
-1.1
|
23
|
3.2
|
9.8
|
0.6
|
NM_001781
|
CD69
|
1.4
|
4.1
|
-1.4
|
21
|
3.2
|
4.9
|
0.9
|
NM_000632
|
CD11b
|
3.3
|
3.1
|
2.7
|
24
|
7.5
|
3
|
2.6
|
NM_000591
|
CD14
|
-1
|
1.2
|
22.4
|
29
|
1.1
|
1.1
|
45.3
|
Signaling and effector molecules
|
NM_002423
|
MMP7
|
29.9
|
36.5
|
-1.4
|
28
|
512
|
181
|
0.6
|
NM_002658
|
PLAU
|
1.3
|
19.9
|
-1
|
28
|
1.1
|
5.3
|
0.6
|
NM_000265
|
NCF1
|
18.6
|
17.8
|
3.8
|
29
|
32
|
39.4
|
2.6
|
NM_005627
|
SGK
|
7.5
|
13
|
-1
|
22
|
10.6
|
52
|
1.6
|
NM_000389
|
p21
|
6.1
|
11.8
|
1.3
|
25
|
42.2
|
42.2
|
1.1
|
NM_000014
|
A2M
|
10.4
|
11.5
|
1.1
|
30
|
52
|
32
|
3.2
|
NM_004994
|
MMP9
|
8.4
|
8.3
|
-1.2
|
30
|
21.1
|
9.2
|
1.1
|
NM_000228
|
LAMB3
|
2.9
|
6.5
|
8.5
|
28
|
32
|
19.7
|
64
|
NM_002468
|
MYD88
|
4.5
|
4.2
|
1.4
|
27
|
27.9
|
7.5
|
1.5
|
NM_000064
|
C3
|
1.8
|
2.3
|
-1
|
27
|
119.4
|
42.2
|
1.2
|
NM_003264
|
TLR2
|
1.4
|
1.6
|
1.1
|
31
|
11.3
|
3.2
|
2
|
NM_000215
|
JAK3
|
1.5
|
1.7
|
1.1
|
18
|
5.7
|
4.9
|
1.4
|
NM_004345
|
LL37
|
-1.2
|
-1.3
|
32.1
|
30
|
1.3
|
0.8
|
84.4
|
NM_001775
|
CD38
|
-1.9
|
-2
|
5.9
|
22
|
1.1
|
0.2
|
7.5
|
NM_001911
|
CTSG
|
-3.4
|
-4.8
|
-1.3
|
21
|
0.03
|
0.01
|
0.6
|
NM_006573
|
TNFSF13B
|
-4.3
|
-5.1
|
-1.2
|
22
|
0.3
|
0.1
|
1.9
|
NM_000250
|
MPO
|
-8.3
|
-9.6
|
-1.1
|
17
|
0.1
|
0.03
|
1.1
|
Transcription factors/Histone modifiers
|
NM_005384
|
NFIL3
|
3.1
|
4.9
|
-1.3
|
27
|
9.8
|
78.8
|
3.2
|
NM_000321
|
RB1
|
2.2
|
1.8
|
1
|
19
|
3
|
1.1
|
-0.2
|
NM_005461
|
MAFB
|
3.3
|
35.8
|
1.2
|
27
|
17.1
|
18.4
|
-1.1
|
NM_005587
|
MEF2A
|
4
|
4.4
|
1.1
|
19
|
9.2
|
4.3
|
1.1
|
NM_002397
|
MEF2C
|
1.8
|
1.9
|
-1.2
|
19
|
8
|
4.3
|
1.6
|
NM_005920
|
MEF2D
|
2.1
|
7.9
|
-1.1
|
26
|
1.1
|
3
|
0.5
|
NM_021958
|
HLX1
|
2.2
|
2.3
|
-1
|
23
|
10.6
|
3.5
|
1.2
|
NM_021999
|
BRI
|
2.6
|
2.2
|
-1.2
|
22
|
8.6
|
3.7
|
1.2
|
NM_005474
|
HDAC5
|
NA
| | |
24
|
4.9
|
4
|
0.8
|
NM_012412
|
H2AV
|
NA
| | |
19
|
2.6
|
1
|
1.3
|
NM_173158
|
Nur77
|
1.2
|
11.7
|
1.1
|
35
|
1.1
|
2.3
|
1
|
NM_001706
|
BCL6
|
7.6
|
19.5
|
1.6
|
25
|
78.8
|
34.3
|
8
|
NM_001964
|
EGR1
|
4.2
|
13.6
|
1.1
|
27
|
14.9
|
1.2
|
1.4
|
NM_005252
|
FOS
|
2.4
|
3.3
|
-1.5
|
26
|
32
|
2.6
|
0.9
|
NM_002167
|
ID3
|
11.9
|
38.9
|
2.7
|
30
|
13
|
18.4
|
8
|
NM_006084
|
IRF9
|
2.5
|
2.8
|
1
|
25
|
214.5
|
5.3
|
1.4
|
NM_000399
|
EGR2
|
5.3
|
27.3
|
1.1
|
28
|
5.3
|
4.3
|
2.5
|
NM_016270
|
KLF2
|
13.9
|
9.8
|
-1.3
|
26
|
32
|
97
|
0.5
|
NM_021784
|
FOXA2
|
4.9
|
2.9
|
-1
|
30
|
73.5
|
16
|
0.3
|
NM_005524
|
HES1
|
2.8
|
2.8
|
1.2
|
32
|
27.9
|
64
|
0.8
|
NM_004235
|
KLF4
|
1.5
|
1.7
|
-1
|
27
|
3.7
|
3
|
1.9
|
NM_002698
|
OCT2
|
2.1
|
3.3
|
-1.2
|
26
|
14.9
|
7
|
0.4
|
NM_030756
|
TCF7L2
|
3
|
2.8
|
-1.2
|
21
|
8.6
|
5.3
|
0.5
|
NM_004030
|
IRF7
|
2.2
|
2.6
|
-1.3
|
26
|
13
|
4.6
|
1.2
|
NM_014707
|
HDAC7
|
3.2
|
2.5
|
-1.2
|
22
|
29.9
|
16
|
0.7
|
NM_003884
|
PCAF
|
2
|
1.8
|
-1.2
|
25
|
3.7
|
1.4
|
0.8
|
NM_005919
|
MEF2B
|
1.3
|
1.4
|
1.3
|
27
|
6.5
|
0.4
|
0.8
|
- 58 genes representative of cytokines, chemokines, signaling molecules, transcription factors and histone modifiers were selected. NA (none applicable) denotes data not available from array experiment. *RQ = 2-ddCt in which ddCt = dCt(samples) - dCt(control U937 cells). dCt denotes Ct value normalized to GAPDH.