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Table 1 Summary of Hamster cDNA sequences

From: Duplex real-time reverse transcriptase PCR to determine cytokine mRNA expression in a hamster model of New World cutaneous leishmaniasis

Hamster Gene Source of cDNA Cloned cDNA fragment
size
Percent nucleotide identity of hamster cDNA compared to ortholog 1
    Rattus norvegicus Sigmodon hispidus Peromyscus maniculatus Mus musculus Homo sapiens
IL-13 Lymph node from
hookworm infected hamster
177 bp 81% 85% 83% 80% 76%*
IL-21 Spleen from hookworm infected hamster 262 bp 90% N/A 2 95% 92% 84%
CCL17 Hamster
cDNA library
344 bp 89% N/A N/A 86% 77%
CCL22 Hamster
cDNA library
Lymph node from
310 bp 88% N/A N/A 89% 82%
CCR4 hookworm infected hamster
Lymph node from
1084 bp 89% N/A N/A 90% 83%
FOXP3 hookworm infected hamster 581 bp 93% N/A 92% 90% 85%
  1. 1 Identity percentage of cross-species identity determined by Basic Local Alignment Search Toll (BLAST) from the National Center for Biotechnology Information (NCBI) using the Nucleotide collection (nr/nt) database and the discontiguous megablast algorithm in all instances except for comparison of hamster to human IL-13, where the Blastn algorithm for somewhat similar sequences was used. The percent identities excluded the primer sequences.
  2. 2 N/A: sequences not available in NCBI.