Figure 5
Visualisation of Gag p24 34-48 PEVIPMFSALSEGAT bound to HLA-DRB1*0101 [PDB:1sje] against a sub state of the Art v 1 25-36 /HLA-DRB1*01:01 simulation. Blue: MHC alpha chain; Red: MHC beta chain; Yellow: Equally distributed snapshots of Art v 125-36 between nanoseconds 25 and 28; Green: Initial conformation of Art v 125-36 at the beginning of the simulation. Black: peptide conformation of the x-ray structures of [PDB:1sjh] Gag p24 34-46 (13mer peptide) and Gag p24 34-48 [PDB:1sje] (15mer peptide).