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Table 2 Differential transcription potentials of MuLV-ERV U3-promoter sequences

From: Injury-elicited stressors alter endogenous retrovirus expression in lymphocytes depending on cell type and source lymphoid organ

TRE

Consensus motif

Occurrence

Burn/No burn

DMRT

ctttcttGTAA cttttgagaa

68

/

1

BRNF

tctggatctatTGAT ttga

35

/

4

BCL6

ctctttcTGGA aactga

31

/

3

TF2D

gctctggtactttttcatcccttgcaaaatGGCG ttact

27

/

1

PTF1

gccaTCTG ttcttggccctga

28

/

1

MYT1

tgagAGCT cagct

27

/

2

AIRE

gtatttctcggtcatttGGGG aaactg

19

/

0

ZNFP

cacaCACC tggtc

22

/

0

NRF1

gggGCCC aggcgcttga

21

/

1

TRE

Consensus motif

Occurrence

B-cell/T-cell

PAX2

gttattcggggaacctgAAAC tg

32

/

13

HAML

ctgaGTGG ttagttc

35

/

8

NKXH

acttttgaGAAC ttagctc

33

/

10

HOMF

taatctTTAA ctgttaatc

16

/

37

SORY

gttctaaaCAAT gtctattttca

14

/

28

HEAT

gagagggtctaatGAAG gttcaaca

10

/

30

MAZF

atggGAGG ggtac/gtacGAGG agagg

8

/

18

MEF2

acaatgtCTAT tttcaagaaatg

5

/

19

GATA

tttAGAT ctaaac

6

/

16

CART

gggtcTAAT gaaggttcaaca

8

/

16

HOXF

gggtcTAAT gaaggttcaa

7

/

17

LHXF

gagagggtcTAAT gaaggttcaa

7

/

16

FXRE

AGGT gcttgacca

5

/

19

GRHL

cacacaGGTT caa

7

/

16

NKX6

atctTTAA ctgttaa

6

/

16

CEBP

aaggttcaGCAA tgg

6

/

15

FKHD

tagttcTAAA caatgtc

5

/

16

PDX1

gaaagagtcTAAT gaaggt

5

/

15

RXRF

cacagGTTC aaggagtggccagagc

5

/

16

  1. Numbers indicate the occurrence frequency of specific TREs (transcription regulatory elements) within the 100 unique U3-promoter sequences. Please refer to (Additional file 3: Table S3) for the complete list of TRE abbreviations.