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Table 3 Summary of observed HLA associations of commonly recognized peptides and previously defined eptiopes contained within them.

From: CTL epitope distribution patterns in the Gag and Nef proteins of HIV-1 from subtype A infected subjects in Kenya: Use of multiple peptide sets increases the detectable breadth of the CTL response

Peptide set (protein) Sequence Number of responders HLA allele in common Previously defined epitope
A-Con1/C-Iso2 (Gag) SLYNTVATLYC 5 A*0201 SLYNTVATL
A-Iso/D-Iso (Gag) SLFNTIATL(Y/W)C 3   
A-Con (Gag) QSLSPRTLNAW 3 B*5703 LSPRTLNAW
A-Con/C-Iso/D-Iso (Gag) EKAFSPEVIPMFSAL 5 B*5701/03 KAFSPEVIPMF
A-Iso (Gag) EKGFNPEVIPMFSAL 3   
A-Con/A-Iso (Gag) EGATPQDLNMMLNIV 4 B*4202 TPQDLNMML
C-Iso/D-Iso (Gag) EGATPQDLNTMLNTV 1   
A-Con (Gag) FRDYVDRFFKTLRAE 7 C W *0304 YVDRFFKTL
A-Con (Gag) MKDCTERQANFLGKI 2 A*0101/03 ND3
A-Iso (Nef) AVTSSNVNHPS 3 A*6802 ND3
A-Iso (Nef) FPVRPQVPLRPMTYK 4 B*4201/02 VPLRPMTY
A-Iso (Nef) FPVRPQVPLRPMTYK 2 B*5301 (B*3501)
A-Iso (Nef) KKRQEILDLWVYHTQ 5 C W *0701 KRQEILDLWVY
A-Iso (Nef) GIRYPLTFGWCFKLV 3 B*5301 YPLTFGWCY
  1. 1Con = Consensus peptide set
  2. 2Iso = Isolate peptide set
  3. 3ND = Not defined previously