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Table 3 Top 10 functional annotations for two merged networks upregulated in response to LPS (based on p value).

From: Divergence of canonical danger signals: The genome-level expression patterns of human mononuclear cells subjected to heat shock or lipopolysaccharide

Category Term # of genes p-value
SP_PIR_KEYWORDS interferon induction 9 9.3E-11
GOTERM_BP_ALL response to biotic stimulus 25 1.6E-8
GOTERM_BP_ALL immune response 23 3.2E-8
GOTERM_BP_ALL defense response 23 1.5E-7
GOTERM_BP_ALL response to stimulus 28 8.4E-5
GOTERM_BP_ALL response to stress 18 1.3E-4
GOTERM_BP_ALL response to external stimulus 13 1.5E-4
GOTERM_BP_ALL organismal physiological process 28 1.8E-4
GOTERM_BP_ALL response to pest/pathogen/parasite 13 2.9E-4
GOTERM_BP_ALL response to other organism 13 4.8E-4
  1. The analysis is based on the default parameters in D.A.V.I.D. and uses Benjamini-Hochberg correction for multiple testing.