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Table 2 TR J gene reverse primers

From: Primer sets for cloning the human repertoire of T cell Receptor Variable regions

OLIGO NAME

OLIGO SEQUENCE

J GENES OPTIMALLY RECOGNIZED

 

ALPHA

 

TRAJ6rev

CGG ATG AAC AAT AAG GCT GGT TC

J6

TRAJ10rev

GAG TTC CAC TTT TAG CTG AG

J10

TRAJ11rev

TGG AGA GAC TAG AAG CAT AG

J11

TRAJ12rev

TGG ACT GAC CAG MAG TCK GG

J12, J8

TRAJ13rev

TGG GAT GAC TTG GAG CTT TG

J13

TRAJ15rev

GGA ACT CAC TGA TAG GTG GG

J15

TRAJ16rev

AAG ATC CAC CTT TAA CAT GG

J16

TRAJ17rev

TGG TTT AAC TAG CAC CCT GG

J17

TRAJ20rev

TGC TCT TAC AGT TAC TGT GG

J20

TRAJ21rev

TGG TTT TAC ATT GAG TTT GG

J21

TRAJ22rev

AGG CCA RAC AGT CAA YTG WGT

J22, J18

TRAJ23rev

GGG TTT CAC AGA TAA CTC CG

J23

TRAJ25rev

TGG TAT GAC CAC MAC YTG GKT

J25, J7

TRAJ26rev

GGG CAG CAC GGA CAA TCT GG

J26

TRAJ27rev

TGG CTT CAC AGT GAG CGT AG

J27

TRAJ29rev

TGC TTT MAC ARA WAG TCT TGT

J29, J9

TRAJ30rev

GGG GAG AAT ATG AAG TCG TG

J30

TRAJ31rev

GGG CTT CAC CAC CAG CTG AG

J31

TRAJ32rev

TGG CTG GAC AGC AAG CAG AG

J32

TRAJ33rev

TGG CTT TAT AAT TAG CTT GG

J33

TRAJ34rev

TGG AAA GAC TTG TAA TCT GG

J34

TRAJ37rev

TGG TTT TAC TTG TAA AGT TG

J37

TRAJ38rev

CGG ATT TAC TGC CAG GCT TG

J38

TRAJ40rev

TGC TAA AAC CTT CAG CCT GG

J40

TRAJ41rev

GGG TGT GAC CAA CAG CGA GG

J41

TRAJ42rev

TGG TAT GAC MGA GAG TTT RGT SC

J42, J28

TRAJ44rev

TGG TTG CAC YTG RAG TCT TGT TC

J44, J5

TRAJ45rev

GGG CTG GAT GAT TAG ATG AG

J45

TRAJ46rev

GGG CCT AAC TGC TAA ACG AG

J46

TRAJ47rev

GGA CTT GAC TCT CAG AAT GG

J47

TRAJ48rev

TGG CCG GAT GST GAG TCT KGT YC

J48, J3

TRAJ36rev

GGG AAT AAY GGT GAG TCT YGT TC

J48, J36

TRAJ49rev

GGG TTT GAC CRT YAA MCT TGT

J49, J39

TRAJ50rev

AGG TTT TAC TGA TAA KCT TGT CC

J50, J14

TRAJ52rev

TGG ATG GAC AGT CAA GAT GG

J52

TRAJ53rev

TGG ATT CAC GGT TAA GAG AG

J53

TRAJ54rev

TGG GTG TAY AGY CAG CCT GGT YC

J54, J4

TRAJ56rev

TGG TCT AAC AC TCA GAG TTA

J56

TRAJ57rev

TGG TTT TAC TGT CAG TYT SG

J57, J43

 

BETA

 

TRBJ1rev

TGT GAC YGT GAG YCT GGT GC

J1-1, J2-7

TRBJ2rev

TGT CAC RGT KAR CCT GGT CC

J1-2, J1-6

TRBJ3rev

TAC AAC AGT GAG CCA ACT TC

J1-3

TRBJ4rev

CAG CAC WGA GAG CYG GGT YC

J1-4, J2-4

TRBJ5rev

TAG GAT GGA GAG TCG AGT CC

J1-5

TRBJ2.1rev

TAG CAC TGT SAG CCG KGT SCC TG

J2-1, J2-3

TRBJ2.2rev

CAG AAC CAG GAG TCC TCC GC

J2-2P

TRBJ2.6rev

CAG TAC GGT CAG CCT RSW GC

J2-2, J2-6

TRBJ2.5rev

GAG CAC CAG GAG CCG CGT GCC TG

J2-5

 

GAMMA

 

TRGJP1rev

AGG CGA AGT TAC TAT GAG CY

JP1,JP2

TRGJPrev

TGT AAT GAT AAG CTT TGT TC

JP

TRGJ1rev

TGT GAC AAC MAG TGT TGT TC

J1,J2

 

DELTA

 

TRDJ1rev

TGG TTC CAC GAT GAG TTG TG

J1

TRDJ2rev

TGG TTC CAC AGT CAC ACG GG

J2

TRDJ3rev

GGG CTC CAC GAA GAG TTT GA

J3

TRDJ4rev

TTG TTG TAC CTC CAG ATA GG

J4

  1. List of optimal primer sequence as designed with the TCRAlignment and TCROligo algorithms for the TRAJ, TRBJ, TRDJ and TRGJ genes.