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Table 4 TR V primers validation

From: Primer sets for cloning the human repertoire of T cell Receptor Variable regions

OLIGO NAME

TRAV GENES OPTIMALLY RECOGNIZED

others found

N

 

Experimentally found

Experimentally Not found

  

TRAV1for

V1-2

V1-1

-

2

TRAV2for

V2

-

-

5

TRAV3for

-

V3, V8-3

-

-

TRAV4for

V26-1

V4, V26-2

-

2

TRAV5for

V10, V34, V41

V5, V22

-

12

TRAV6for

V6

-

-

3

TRAV7for

V7

-

-

2

TRAV8for

V8-1, V8-4, V8-6

V8-2, V8-7

-

13

TRAV9for

V9-1

V9-2

-

2

TRAV12for

V12-1

V12-2, V12-3

-

2

TRAV13for

V13-1, V13-2

-

-

2

TRAV14for

V19

V14/DV4

TRDV1

4

TRAV16for

V16

V38-1, V38-2/DV8

TRB11-3

3

TRAV17for

V17

-

-

3

TRAV18for

V18

-

-

1

TRAV20for

V20, V21

-

-

5

TRAV23for

V23/DV6

-

-

5

TRAV24for

V24-

V39

V6

1

TRAV25for

V25

-

-

2

TRAV27for

V27

-

-

1

TRAV29for

V29/DV5

-

18-1

2

TRAV30for

V30

-

-

1

TRAV35for

V35

-

-

1

TRAV36for

V36/DV7

-

-

1

TRAV40for

V40

-

-

1

 

TRBV GENES OPTIMALLY RECOGNIZED

others found

N

 

Experimentally found

Experimentally Not found

  

TRBV2for

V2, V23-1

V16

V6-5, V7-6, V12-5, V24-1

10

TRBV3for

V3-1, V24-1

-

-

2

TRBV4for

V4-1, V4-3, V12-5

V4-2

-

4

TRBV5for

V5-1, V5-4, V5-5, V5-6, V5-7

V5-3, V9, V5-8

-

7

TRBV6for

V6-1, V6-2, V6-5

V6-3, V6-6, V6-7, V6-8, V6-9, V17

V2

5

TRBV7for

V7-1, V7-2, V7-3, V7-4

V7-6, V7-7, V7-8, V7-9, V11-2

-

7

TRBV10for

V6-4

V10-1, V10-2, V10-3

-

1

TRBV11for

V11-1

-

-

4

TRBV13for

V12-3

V13, V12-4

 

7

TRBV14for

V14

V11-3

V11-2

3

TRBV15for

V15

-

-

2

TRBV18for

V18

-

-

5

TRBV19for

V19

-

-

2

TRBV20for

V29-1

V20-1

-

3

TRBV25for

V25-1

-

-

1

TRBV27for

V28

V27

-

5

TRBV30for

V30

-

-

1

  1. Primer specificity validation by DNA sequencing. PCR products (see Fig. 1) were cloned in pTZ57R/T vector and up to thirteen clones randomly selected and sequenced. N = number of sequenced clones