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Table 3 Prediction performance of selected representative servers in order to exclude all false positives

From: Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

Server Thr3 TP (binding) TN (binding) FP (binding) FN (binding) TP (tumor epitopes) TP (viral epitopes)
BIMAS (A) 2 10 143 0 23 76 (89%) 39 (89%)
MHCP_I (A) 10 0 143 0 33 2 (2%) 1 (2%)
IEDB_SMM (B) 1,000 10 143 0 23 77 (91%) 38 (86%)
NHP_CP (C) 0.5 6 143 0 27 76 (89%) 40 (91%)
IEDB_ANN (D) 10,000 9 143 0 24 76 (89%) 39 (89%)
MULTI_SVM (D) 5.8 4 143 0 29 75 (88%) 40 (91%)
NETM_ANN (D) 10,000 15 143 0 18 80 (94%) 41 (93%)