TY - JOUR AU - Borregaard, N. PY - 2010 DA - 2010// TI - Neutrophils, from marrow to microbes JO - Immunity VL - 33 UR - https://doi.org/10.1016/j.immuni.2010.11.011 DO - 10.1016/j.immuni.2010.11.011 ID - Borregaard2010 ER - TY - JOUR AU - Rosenbauer, F. AU - Tenen, D. G. PY - 2007 DA - 2007// TI - Transcription factors in myeloid development: balancing differentiation with transformation JO - Nat Rev Immunol VL - 7 UR - https://doi.org/10.1038/nri2024 DO - 10.1038/nri2024 ID - Rosenbauer2007 ER - TY - JOUR AU - Tenen, D. G. AU - Hromas, R. AU - Licht, J. D. AU - Zhang, D. E. PY - 1997 DA - 1997// TI - Transcription factors, normal myeloid development, and leukemia JO - Blood VL - 90 ID - Tenen1997 ER - TY - JOUR AU - Nakajima, H. AU - Watanabe, N. AU - Shibata, F. AU - Kitamura, T. AU - Ikeda, Y. AU - Handa, M. PY - 2006 DA - 2006// TI - N-terminal region of CCAAT/enhancer-binding protein epsilon is critical for cell cycle arrest, apoptosis, and functional maturation during myeloid differentiation JO - J Biol Chem VL - 281 UR - https://doi.org/10.1074/jbc.M600575200 DO - 10.1074/jbc.M600575200 ID - Nakajima2006 ER - TY - JOUR AU - Peterson, S. M. AU - Thompson, J. A. AU - Ufkin, M. L. AU - Sathyanarayana, P. AU - Liaw, L. AU - Congdon, C. B. PY - 2014 DA - 2014// TI - Common features of microRNA target prediction tools JO - Front Genet VL - 5 UR - https://doi.org/10.3389/fgene.2014.00023 DO - 10.3389/fgene.2014.00023 ID - Peterson2014 ER - TY - JOUR AU - Thomson, D. W. AU - Bracken, C. P. AU - Goodall, G. J. PY - 2011 DA - 2011// TI - Experimental strategies for microRNA target identification JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr330 DO - 10.1093/nar/gkr330 ID - Thomson2011 ER - TY - JOUR AU - Tsitsiou, E. AU - Lindsay, M. A. PY - 2009 DA - 2009// TI - microRNAs and the immune response JO - Curr Opin Pharmacol VL - 9 UR - https://doi.org/10.1016/j.coph.2009.05.003 DO - 10.1016/j.coph.2009.05.003 ID - Tsitsiou2009 ER - TY - JOUR AU - Di, L. G. AU - Garofalo, M. AU - Croce, C. M. PY - 2014 DA - 2014// TI - MicroRNAs in cancer JO - Annu Rev Pathol VL - 9 UR - https://doi.org/10.1146/annurev-pathol-012513-104715 DO - 10.1146/annurev-pathol-012513-104715 ID - Di2014 ER - TY - JOUR AU - Hager, M. AU - Pedersen, C. C. AU - Larsen, M. T. AU - Andersen, M. K. AU - Hother, C. AU - Gronbaek, K. PY - 2011 DA - 2011// TI - MicroRNA-130a-mediated down-regulation of Smad4 contributes to reduced sensitivity to TGF-beta1 stimulation in granulocytic precursors JO - Blood VL - 118 UR - https://doi.org/10.1182/blood-2011-03-339978 DO - 10.1182/blood-2011-03-339978 ID - Hager2011 ER - TY - JOUR AU - Larsen, M. T. AU - Hother, C. AU - Hager, M. AU - Pedersen, C. C. AU - Theilgaard-Monch, K. AU - Borregaard, N. PY - 2013 DA - 2013// TI - MicroRNA profiling in human neutrophils during bone marrow granulopoiesis and in vivo exudation JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0058454 DO - 10.1371/journal.pone.0058454 ID - Larsen2013 ER - TY - JOUR AU - Larsen, M. T. AU - Hager, M. AU - Glenthoj, A. AU - Asmar, F. AU - Clemmensen, S. N. AU - Mora-Jensen, H. PY - 2014 DA - 2014// TI - miRNA-130a regulates C/EBP-epsilon expression during granulopoiesis JO - Blood VL - 123 UR - https://doi.org/10.1182/blood-2013-08-523233 DO - 10.1182/blood-2013-08-523233 ID - Larsen2014 ER - TY - JOUR AU - John, B. AU - Enright, A. J. AU - Aravin, A. AU - Tuschl, T. AU - Sander, C. AU - Marks, D. S. PY - 2004 DA - 2004// TI - Human MicroRNA targets JO - PLoS Biol VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020363 DO - 10.1371/journal.pbio.0020363 ID - John2004 ER - TY - JOUR AU - Lewis, B. P. AU - Burge, C. B. AU - Bartel, D. P. PY - 2005 DA - 2005// TI - Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets JO - Cell VL - 120 UR - https://doi.org/10.1016/j.cell.2004.12.035 DO - 10.1016/j.cell.2004.12.035 ID - Lewis2005 ER - TY - JOUR AU - Witkos, T. M. AU - Koscianska, E. AU - Krzyzosiak, W. J. PY - 2011 DA - 2011// TI - Practical Aspects of microRNA Target Prediction JO - Curr Mol Med VL - 11 UR - https://doi.org/10.2174/156652411794859250 DO - 10.2174/156652411794859250 ID - Witkos2011 ER - TY - JOUR AU - Inomata, M. AU - Tagawa, H. AU - Guo, Y. M. AU - Kameoka, Y. AU - Takahashi, N. AU - Sawada, K. PY - 2009 DA - 2009// TI - MicroRNA-17-92 down-regulates expression of distinct targets in different B-cell lymphoma subtypes JO - Blood VL - 113 UR - https://doi.org/10.1182/blood-2008-07-163907 DO - 10.1182/blood-2008-07-163907 ID - Inomata2009 ER - TY - JOUR AU - Salmena, L. AU - Poliseno, L. AU - Tay, Y. AU - Kats, L. AU - Pandolfi, P. P. PY - 2011 DA - 2011// TI - A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? JO - Cell VL - 146 UR - https://doi.org/10.1016/j.cell.2011.07.014 DO - 10.1016/j.cell.2011.07.014 ID - Salmena2011 ER - TY - JOUR AU - Easow, G. AU - Teleman, A. A. AU - Cohen, S. M. PY - 2007 DA - 2007// TI - Isolation of microRNA targets by miRNP immunopurification JO - RNA VL - 13 UR - https://doi.org/10.1261/rna.563707 DO - 10.1261/rna.563707 ID - Easow2007 ER - TY - JOUR AU - Selbach, M. AU - Schwanhausser, B. AU - Thierfelder, N. AU - Fang, Z. AU - Khanin, R. AU - Rajewsky, N. PY - 2008 DA - 2008// TI - Widespread changes in protein synthesis induced by microRNAs JO - Nature VL - 455 UR - https://doi.org/10.1038/nature07228 DO - 10.1038/nature07228 ID - Selbach2008 ER - TY - JOUR AU - Landthaler, M. AU - Gaidatzis, D. AU - Rothballer, A. AU - Chen, P. Y. AU - Soll, S. J. AU - Dinic, L. PY - 2008 DA - 2008// TI - Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs JO - RNA VL - 14 UR - https://doi.org/10.1261/rna.1351608 DO - 10.1261/rna.1351608 ID - Landthaler2008 ER - TY - JOUR AU - Sood, P. AU - Krek, A. AU - Zavolan, M. AU - Macino, G. AU - Rajewsky, N. PY - 2006 DA - 2006// TI - Cell-type-specific signatures of microRNAs on target mRNA expression JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0511045103 DO - 10.1073/pnas.0511045103 ID - Sood2006 ER - TY - JOUR AU - Sun, R. AU - Fu, X. AU - Li, Y. AU - Xie, Y. AU - Mao, Y. PY - 2009 DA - 2009// TI - Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-93 DO - 10.1186/1471-2164-10-93 ID - Sun2009 ER - TY - JOUR AU - Vinther, J. AU - Hedegaard, M. M. AU - Gardner, P. P. AU - Andersen, J. S. AU - Arctander, P. PY - 2006 DA - 2006// TI - Identification of miRNA targets with stable isotope labeling by amino acids in cell culture JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl590 DO - 10.1093/nar/gkl590 ID - Vinther2006 ER - TY - JOUR AU - Baek, D. AU - Villen, J. AU - Shin, C. AU - Camargo, F. D. AU - Gygi, S. P. AU - Bartel, D. P. PY - 2008 DA - 2008// TI - The impact of microRNAs on protein output JO - Nature VL - 455 UR - https://doi.org/10.1038/nature07242 DO - 10.1038/nature07242 ID - Baek2008 ER - TY - JOUR AU - Lossner, C. AU - Warnken, U. AU - Pscherer, A. AU - Schnolzer, M. PY - 2011 DA - 2011// TI - Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions JO - Anal Biochem VL - 412 UR - https://doi.org/10.1016/j.ab.2011.01.011 DO - 10.1016/j.ab.2011.01.011 ID - Lossner2011 ER - TY - JOUR AU - Rappsilber, J. AU - Ishihama, Y. AU - Mann, M. PY - 2003 DA - 2003// TI - Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics JO - Anal Chem VL - 75 UR - https://doi.org/10.1021/ac026117i DO - 10.1021/ac026117i ID - Rappsilber2003 ER - TY - JOUR AU - Cox, J. AU - Mann, M. PY - 2008 DA - 2008// TI - MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification JO - Nat Biotechnol VL - 26 UR - https://doi.org/10.1038/nbt.1511 DO - 10.1038/nbt.1511 ID - Cox2008 ER - TY - JOUR AU - Cox, J. AU - Neuhauser, N. AU - Michalski, A. AU - Scheltema, R. A. AU - Olsen, J. V. AU - Mann, M. PY - 2011 DA - 2011// TI - Andromeda: a peptide search engine integrated into the MaxQuant environment JO - J Proteome Res VL - 10 UR - https://doi.org/10.1021/pr101065j DO - 10.1021/pr101065j ID - Cox2011 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing JO - J R Stat Soc VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Kinsella, R. J. AU - Kahari, A. AU - Haider, S. AU - Zamora, J. AU - Proctor, G. AU - Spudich, G. PY - 2011 DA - 2011// TI - Ensembl BioMarts: a hub for data retrieval across taxonomic space JO - Database (Oxford) VL - 2011 UR - https://doi.org/10.1093/database/bar030 DO - 10.1093/database/bar030 ID - Kinsella2011 ER - TY - JOUR AU - Hsu, S. D. AU - Tseng, Y. T. AU - Shrestha, S. AU - Lin, Y. L. AU - Khaleel, A. AU - Chou, C. H. PY - 2014 DA - 2014// TI - miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1266 DO - 10.1093/nar/gkt1266 ID - Hsu2014 ER - TY - JOUR AU - Yuan, J. AU - Wu, W. AU - Xie, C. AU - Zhao, G. AU - Zhao, Y. AU - Chen, R. PY - 2014 DA - 2014// TI - NPInter v2.0: an updated database of ncRNA interactions JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1057 DO - 10.1093/nar/gkt1057 ID - Yuan2014 ER - TY - JOUR AU - Li, J. H. AU - Liu, S. AU - Zhou, H. AU - Qu, L. H. AU - Yang, J. H. PY - 2014 DA - 2014// TI - starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1248 DO - 10.1093/nar/gkt1248 ID - Li2014 ER - TY - JOUR AU - Croft, L. AU - Szklarczyk, D. AU - Jensen, L. J. AU - Gorodkin, J. PY - 2012 DA - 2012// TI - Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs JO - BMC Syst Biol VL - 6 UR - https://doi.org/10.1186/1752-0509-6-90 DO - 10.1186/1752-0509-6-90 ID - Croft2012 ER - TY - JOUR AU - Garcia, D. M. AU - Baek, D. AU - Shin, C. AU - Bell, G. W. AU - Grimson, A. AU - Bartel, D. P. PY - 2011 DA - 2011// TI - Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs JO - Nat Struct Mol Biol VL - 18 UR - https://doi.org/10.1038/nsmb.2115 DO - 10.1038/nsmb.2115 ID - Garcia2011 ER - TY - JOUR AU - Krek, A. AU - Grun, D. AU - Poy, M. N. AU - Wolf, R. AU - Rosenberg, L. AU - Epstein, E. J. PY - 2005 DA - 2005// TI - Combinatorial microRNA target predictions JO - Nat Genet VL - 37 UR - https://doi.org/10.1038/ng1536 DO - 10.1038/ng1536 ID - Krek2005 ER - TY - JOUR AU - Rennie, W. AU - Liu, C. AU - Carmack, C. S. AU - Wolenc, A. AU - Kanoria, S. AU - Lu, J. PY - 2014 DA - 2014// TI - STarMir: a web server for prediction of microRNA binding sites JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gku376 DO - 10.1093/nar/gku376 ID - Rennie2014 ER - TY - JOUR AU - Szklarczyk, D. AU - Franceschini, A. AU - Wyder, S. AU - Forslund, K. AU - Heller, D. AU - Huerta-Cepas, J. PY - 2015 DA - 2015// TI - STRING v10: protein-protein interaction networks, integrated over the tree of life JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1003 DO - 10.1093/nar/gku1003 ID - Szklarczyk2015 ER - TY - JOUR AU - Shannon, P. AU - Markiel, A. AU - Ozier, O. AU - Baliga, N. S. AU - Wang, J. T. AU - Ramage, D. PY - 2003 DA - 2003// TI - Cytoscape: a software environment for integrated models of biomolecular interaction networks JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1239303 DO - 10.1101/gr.1239303 ID - Shannon2003 ER - TY - JOUR AU - Huang, D. W. AU - Sherman, B. T. AU - Lempicki, R. A. PY - 2009 DA - 2009// TI - Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn923 DO - 10.1093/nar/gkn923 ID - Huang2009 ER - TY - JOUR AU - Huang, D. W. AU - Sherman, B. T. AU - Lempicki, R. A. PY - 2009 DA - 2009// TI - Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources JO - Nat Protoc VL - 4 UR - https://doi.org/10.1038/nprot.2008.211 DO - 10.1038/nprot.2008.211 ID - Huang2009 ER - TY - JOUR AU - Ebner, O. A. AU - Selbach, M. PY - 2011 DA - 2011// TI - Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach JO - Methods Mol Biol VL - 725 UR - https://doi.org/10.1007/978-1-61779-046-1_20 DO - 10.1007/978-1-61779-046-1_20 ID - Ebner2011 ER - TY - JOUR AU - Kaller, M. AU - Oeljeklaus, S. AU - Warscheid, B. AU - Hermeking, H. PY - 2014 DA - 2014// TI - Identification of microRNA targets by pulsed SILAC JO - Methods Mol Biol VL - 1188 UR - https://doi.org/10.1007/978-1-4939-1142-4_23 DO - 10.1007/978-1-4939-1142-4_23 ID - Kaller2014 ER - TY - JOUR AU - Brodersen, P. AU - Voinnet, O. PY - 2009 DA - 2009// TI - Revisiting the principles of microRNA target recognition and mode of action JO - Nat Rev Mol Cell Biol VL - 10 UR - https://doi.org/10.1038/nrm2619 DO - 10.1038/nrm2619 ID - Brodersen2009 ER - TY - JOUR AU - Vlachos, I. S. AU - Hatzigeorgiou, A. G. PY - 2013 DA - 2013// TI - Online resources for miRNA analysis JO - Clin Biochem VL - 46 UR - https://doi.org/10.1016/j.clinbiochem.2013.03.006 DO - 10.1016/j.clinbiochem.2013.03.006 ID - Vlachos2013 ER - TY - JOUR AU - Bantscheff, M. AU - Schirle, M. AU - Sweetman, G. AU - Rick, J. AU - Kuster, B. PY - 2007 DA - 2007// TI - Quantitative mass spectrometry in proteomics: a critical review JO - Anal Bioanal Chem VL - 389 UR - https://doi.org/10.1007/s00216-007-1486-6 DO - 10.1007/s00216-007-1486-6 ID - Bantscheff2007 ER - TY - JOUR AU - Bantscheff, M. AU - Lemeer, S. AU - Savitski, M. M. AU - Kuster, B. PY - 2012 DA - 2012// TI - Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present JO - Anal Bioanal Chem VL - 404 UR - https://doi.org/10.1007/s00216-012-6203-4 DO - 10.1007/s00216-012-6203-4 ID - Bantscheff2012 ER - TY - JOUR AU - Tacheny, A. AU - Dieu, M. AU - Arnould, T. AU - Renard, P. PY - 2013 DA - 2013// TI - Mass spectrometry-based identification of proteins interacting with nucleic acids JO - J Proteomics VL - 94 UR - https://doi.org/10.1016/j.jprot.2013.09.011 DO - 10.1016/j.jprot.2013.09.011 ID - Tacheny2013 ER - TY - JOUR AU - Bjerregaard, M. D. AU - Jurlander, J. AU - Klausen, P. AU - Borregaard, N. AU - Cowland, J. B. PY - 2003 DA - 2003// TI - The in vivo profile of transcription factors during neutrophil differentiation in human bone marrow JO - Blood VL - 101 UR - https://doi.org/10.1182/blood-2002-03-0835 DO - 10.1182/blood-2002-03-0835 ID - Bjerregaard2003 ER - TY - JOUR AU - Yao, C. AU - Qin, Z. AU - Works, K. N. AU - Austin, G. E. AU - Young, A. N. PY - 2008 DA - 2008// TI - C/EBP and C-Myb sites are important for the functional activity of the human myeloperoxidase upstream enhancer JO - Biochem Biophys Res Commun VL - 371 UR - https://doi.org/10.1016/j.bbrc.2008.04.065 DO - 10.1016/j.bbrc.2008.04.065 ID - Yao2008 ER - TY - JOUR AU - Sturrock, A. AU - Franklin, K. F. AU - Wu, S. AU - Hoidal, J. R. PY - 1998 DA - 1998// TI - Characterization and localization of the genes for mouse proteinase-3 (Prtn3) and neutrophil elastase (Ela2) JO - Cytogenet Cell Genet VL - 83 UR - https://doi.org/10.1159/000015144 DO - 10.1159/000015144 ID - Sturrock1998 ER - TY - JOUR AU - Klausen, P. AU - Bjerregaard, M. D. AU - Borregaard, N. AU - Cowland, J. B. PY - 2004 DA - 2004// TI - End-stage differentiation of neutrophil granulocytes in vivo is accompanied by up-regulation of p27kip1 and down-regulation of CDK2, CDK4, and CDK6 JO - J Leukoc Biol VL - 75 UR - https://doi.org/10.1189/jlb.1003474 DO - 10.1189/jlb.1003474 ID - Klausen2004 ER - TY - JOUR AU - Benatti, P. AU - Dolfini, D. AU - Vigano, A. AU - Ravo, M. AU - Weisz, A. AU - Imbriano, C. PY - 2011 DA - 2011// TI - Specific inhibition of NF-Y subunits triggers different cell proliferation defects JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr128 DO - 10.1093/nar/gkr128 ID - Benatti2011 ER - TY - JOUR AU - Gronemeyer, T. AU - Wiese, S. AU - Ofman, R. AU - Bunse, C. AU - Pawlas, M. AU - Hayen, H. PY - 2013 DA - 2013// TI - The proteome of human liver peroxisomes: identification of five new peroxisomal constituents by a label-free quantitative proteomics survey JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0057395 DO - 10.1371/journal.pone.0057395 ID - Gronemeyer2013 ER - TY - JOUR AU - Yamaga, R. AU - Ikeda, K. AU - Boele, J. AU - Horie-Inoue, K. AU - Takayama, K. AU - Urano, T. PY - 2014 DA - 2014// TI - Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping JO - Biochem Biophys Res Commun VL - 447 UR - https://doi.org/10.1016/j.bbrc.2014.04.033 DO - 10.1016/j.bbrc.2014.04.033 ID - Yamaga2014 ER - TY - JOUR AU - Chelikani, P. AU - Fita, I. AU - Loewen, P. C. PY - 2004 DA - 2004// TI - Diversity of structures and properties among catalases JO - Cell Mol Life Sci VL - 61 UR - https://doi.org/10.1007/s00018-003-3206-5 DO - 10.1007/s00018-003-3206-5 ID - Chelikani2004 ER - TY - JOUR AU - Santen, G. W. AU - Kriek, M. AU - Attikum, H. PY - 2012 DA - 2012// TI - SWI/SNF complex in disorder: SWItching from malignancies to intellectual disability JO - Epigenetics VL - 7 UR - https://doi.org/10.4161/epi.22299 DO - 10.4161/epi.22299 ID - Santen2012 ER -