From: Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes
Cutoffs | TP | FP | FN | TN | Total | Accuracy | Sensitivity | Specificity | Precision | False Positive Rate | Matthews Correlation Coefficient |
---|---|---|---|---|---|---|---|---|---|---|---|
RF ≥ 1.00 | 34 | 44 | 6 | 18 | 102 | 0.510 | 0.850 | 0.290 | 0.436 | 0.710 | 0.162 |
RF ≥ 1.20 | 33 | 36 | 7 | 26 | 102 | 0.578 | 0.825 | 0.419 | 0.478 | 0.581 | 0.255 |
RF ≥ 1.25 | 33 | 35 | 7 | 27 | 102 | 0.588 | 0.825 | 0.435 | 0.485 | 0.565 | 0.270 |
RF ≥ 1.30 | 33 | 32 | 7 | 30 | 102 | 0.618 | 0.825 | 0.484 | 0.508 | 0.516 | 0.314 |
RF ≥ 1.35 | 31 | 31 | 9 | 31 | 102 | 0.608 | 0.775 | 0.500 | 0.500 | 0.500 | 0.275 |
RF ≥ 1.40 | 31 | 30 | 9 | 32 | 102 | 0.618 | 0.775 | 0.516 | 0.508 | 0.484 | 0.290 |
RF ≥ 1.45 | 30 | 29 | 10 | 33 | 102 | 0.618 | 0.750 | 0.532 | 0.508 | 0.468 | 0.279 |
RF ≥ 1.50 | 29 | 27 | 11 | 35 | 102 | 0.627 | 0.725 | 0.565 | 0.518 | 0.435 | 0.284 |
RF ≥ 1.75 | 26 | 24 | 14 | 38 | 102 | 0.627 | 0.650 | 0.613 | 0.520 | 0.387 | 0.257 |
RF ≥ 2.00 | 21 | 22 | 19 | 40 | 102 | 0.598 | 0.525 | 0.645 | 0.488 | 0.355 | 0.168 |
RF ≥ 2.50 | 16 | 15 | 24 | 47 | 102 | 0.618 | 0.400 | 0.758 | 0.516 | 0.242 | 0.168 |