Table 1 Summary of RNA-seq reads used in analysis

Raw reads

97,277,834

122,099,646

85,307,388

103,111,480

101,949,087 + 15,342,348.1003348^a

Clean reads

94,730,320

117,723,315

81,786,909

98,488,282

98,182,206.5 + 14,862,367.5115245

paired-end reads

92,564,654

114,105,262

78,689,244

94,366,960

94,931,530 + 14,575,832.6760188

Total mapped

84,903,807 (91.72%^b)

105,756,131 (92.68%)

70,202,863 (89.22%)

85,742,261 (90.86%)

86,651,265.5 + 14,599,380.4773278

Total Uniquely mapped

81,485,850 (95.97%^c)

101,851,278 (96.31%)

67,016,487 (95.46%)

82,999,189 (96.8%)

83,338,201 + 14,290,772.0956458

Splice reads

33,118,198 (40.64%^d)

42,059,737 (41.3%)

28,029,484 (41.82%)

34,446,000 (41.5%)