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Table 1 Summary of RNA-seq reads used in analysis

From: Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

Sample ZFP36_1st ZFP36_2nd Ctrl_1st Ctrl_2nd  
Raw reads 97,277,834 122,099,646 85,307,388 103,111,480 101,949,087 + 15,342,348.1003348a
Clean reads 94,730,320 117,723,315 81,786,909 98,488,282 98,182,206.5 + 14,862,367.5115245
paired-end reads 92,564,654 114,105,262 78,689,244 94,366,960 94,931,530 + 14,575,832.6760188
Total mapped 84,903,807 (91.72%b) 105,756,131 (92.68%) 70,202,863 (89.22%) 85,742,261 (90.86%) 86,651,265.5 + 14,599,380.4773278
Total Uniquely mapped 81,485,850 (95.97%c) 101,851,278 (96.31%) 67,016,487 (95.46%) 82,999,189 (96.8%) 83,338,201 + 14,290,772.0956458
Splice reads 33,118,198 (40.64%d) 42,059,737 (41.3%) 28,029,484 (41.82%) 34,446,000 (41.5%)  
  1. aThe mean and standard deviation across the 4 samples
  2. bthe percentage of paired-end reads that were mapped to the genome
  3. cthe percentage of unique reads mapping out of the total mapped reads
  4. dthe percentage of uniquely mapped reads that were mapped to splice site