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Table 1 Oligonucleotide primers used to amplify the gcCXCR5 gene

From: The first non-mammalian CXCR5 in a teleost fish: molecular cloning and expression analysis in grass carp (Ctenopharyngodon idella)

Name

Sequence (5'-3')

Usage

F1

ATCTACCTGCTA(G)CAC(T)CTGGC

Cloning for the internal fragment

R1

AGCAGC(G)TGC(G)AGCAGGTCG(T)C(T)T

 

UPM Long

CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT

Race-PCR Universal primers

UPM Short

CTAATACGACTCACTATAGGGC

 

AAP

GGCCACGCGTCGACTAGTACGGGIIGGGIIGGGIIG

5' RACE Abridged Primer

AUAP

GGCCACGCGTCGACTAGTAC

 

5-R1

GGTTCCAAAAAGCCA

5'RACE 1st round PCR

5-R2

CTTGAGTAACTGCGAATGGAAA

5'RACE 2nd round PCR

5-R3

GAGCAGGTCAGCCAGTGCCAGAT

5'RACE 3rd round PCR

3-F1

GTTTTCTGCCTGTGCTGGCTACCG

3'RACE 1st round PCR

3-F2

CCCTGGTAGTGTTGGGTGTTATGCC

3'RACE 2nd round PCR

3-F3

CCGTTTCCGAAGAGACCTCCTGC

3'RACE 1st round PCR

3-F4

GCCATTACTACCACAACAAGCAGC

3'RACE 2nd round PCR

D-F1

TGGACGAGGACACACACTTCTGAG

For intron

D-R1

GCCGTTTTAGCAGGACTGTCAAGAG

 

β-actinF

CCTTCTTGGGTATGGAGTCTTGAGAGTATTTACGCTCAGGTGGG

Real-time quantitative PCR control

β-actinR

  

RT-F1

GTGTTGGGTGTTATGCCTGAGATGTATTGGCTGCTTGTTGTG

Real-time quantitative PCR

RT-R1

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