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Table 2 SNP associations identified through the model selection procedure, sorted from the smallest to the largest multi-SNP p-value.

From: Associations between SNPs in candidate immune-relevant genes and rubella antibody levels: a multigenic assessment

SNP Gene Location MAF (%) Median (Q1 - Q3)a Univariate p-value Multi-SNP Results
0 Minor Alleles 1 Minor Allele 2 Minor Alleles Estimateb S.E.c p-value
rs2844482 LTA 5'UTR 15.5 32(18.6-59.3) 41.2(21.3-72.6) 72.5(41.5-108.7) 0.000 0.164 0.027 <0.001
rs1880241 IL6 5'UTR 49.1 30.1(17.6-59) 36.2(19.8-67.6) 40.3(20.3-68.2) 0.014 0.133 0.024 <0.001
rs2243248 IL4 5'UTR 7.3 36.2(19.4-66.2) 27.8(16.5-56.2) 17.9(17.8-129.9) 0.023 -0.182 0.036 <0.001
rs1800795 IL6 5'UTR 42.8 37.2(19.2-70.1) 32.6(19-61.4) 39.9(19.4-63.1) 0.511 -0.102 0.025 <0.001
rs2256965 LST1 intron 42.9 36.3(18.8-66.7) 33.9(18.6-64.5) 32.6(21.2-59.4) 0.891 0.085 0.021 <0.001
rs4787947 IL4R 5'UTR 8.7 32.7(18.4-62.4) 43.2(26.4-68.8) 79.4(48.5-107) 0.002 0.119 0.029 <0.001
rs2227284 IL4 intron 31.1 31.8(18.9-60.1) 37.9(19.6-69.5) 38.1(18.3-69.7) 0.179 0.081 0.020 <0.001
rs1800629 TNF 5'UTR 17.4 33.7(19.2-61.7) 39.5(19.6-73.5) 31.2(21.8-68.2) 0.132 0.104 0.026 <0.001
rs9610 IL10RA 3'UTR 44.1 39.9(21.3-69.7) 33.2(18.6-66.3) 29.6(18.3-52.4) 0.004 -0.064 0.017 <0.001
rs2256774 IL2RA intron 33.8 33.6(18.1-59.2) 33.1(19.5-64.5) 42.8(26.1-78.7) 0.016 0.064 0.017 <0.001
rs9427092 ADAR 3'UTR 22.7 33.3(19-61.1) 34.8(19.5-67.5) 40.3(22.8-83.2) 0.102 0.069 0.021 0.001
rs2243300 IL4 5'UTR 8.3 33.8(19-63.3) 37.7(20.1-63.7) 46.7(29.1-262.1) 0.252 0.100 0.032 0.002
rs1153592 RARB intron 16.4 36.6(19.6-65.4) 31.1(18.1-60.1) 41.4(20.5-61.1) 0.079 -0.067 0.023 0.003
rs228979 IL2RB intron 26.0 37.3(20.6-66.5) 31.2(18-59.7) 25.9(18.8-67.6) 0.048 -0.053 0.019 0.005
rs3091338 IL3 3'UTR 38.2 33.3(18.2-60.6) 33.6(19.5-63.1) 39.8(20.7-72.3) 0.100 0.049 0.018 0.006
rs12757998 RNASEL 3'UTR 28.0 33.4(18.8-58.9) 37(19.6-68.3) 35.5(18.7-72.6) 0.130 0.052 0.019 0.006
rs1732778 OAS2 3'UTR 25.1 32.9(19.2-57.4) 38.4(19.1-71.7) 37.8(19.3-74.8) 0.036 0.052 0.019 0.007
rs4648212 EIF2AK2 intron 6.5 36.7(19.5-65) 27.6(16.6-52) 22.7(20.5-23.6) 0.018 -0.087 0.033 0.008
rs2229857 ADAR coding 27.4 31.2(18-63) 40.3(20.5-65) 39.1(21.5-64.5) 0.072 0.049 0.019 0.011
rs17882988 TNFRSF1B intron 17.3 34(18.8-62) 33.3(19.7-64.5) 67.8(33.2-108.1) 0.183 0.055 0.022 0.011
rs3740996 TRIM5 coding 10.7 37.3(19.6-68.2) 27.3(17.6-56.2) 39.8(21.1-81.9) 0.016 -0.069 0.027 0.011
rs2246614 MUPCDH coding 34.9 36.3(20-68.2) 32.9(18.9-60.1) 35.3(17.7-64.6) 0.202 -0.043 0.018 0.014
rs2179 TRIM22 intron 30.0 37.4(19.6-66.3) 33.5(18.2-64.8) 26.8(17.2-46.7) 0.039 -0.044 0.018 0.015
rs2287350 EIF2AK2 intron 38.1 33.3(19.5-68.3) 36.1(19-67.2) 31.1(18.8-53.1) 0.057 -0.041 0.017 0.018
rs1422876 IL12B 5'UTR 48.9 31(17.9-66.2) 36.9(19.6-63.7) 36.3(19.5-62.2) 0.200 0.040 0.017 0.018
rs2226299 IFNAR1 intron 18.6 33.2(19.2-62.9) 35(18.2-67.6) 39.1(28.2-60.1) 0.308 0.049 0.021 0.022
rs6793694 RARB intron 37.7 37.4(19.9-66.5) 33.3(18.8-63.1) 32.7(17.3-56.8) 0.039 -0.040 0.018 0.023
rs11064145 SCNN1A 3'UTR 42.5 28.4(17.9-61.1) 39.7(20.6-67.6) 36.5(19.1-60.1) 0.100 0.038 0.017 0.024
rs12626735 TMEM50B 3'UTR 21.1 38.4(19.6-69.7) 29.6(18.3-55.8) 31.2(18.9-59.1) 0.013 -0.045 0.020 0.030
  1. Identified SNPs are all significant when adjusting for all other SNPs shown in the table, and for the descriptive variables outlined in Table 1. Univariate results are shown for comparison.
  2. Notes:
  3. a Q1 and Q3 represent the first and third quartiles, the 25th and 75th percentiles, respectively.
  4. b Estimate represents the difference in log(antibody level) associated with carrying one copy of the minor allele. The anti-log of this quantity provides an estimate of the fold-change in antibody levels associated with carrying one copy of the minor allele.
  5. c S.E. represents the standard error of the Estimate. The ratio of the Estimate to the S.E. provides a measure of the relative strength of the effect among the SNPs
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BMC Immunology

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