Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

BMC Immunology

Table 4 List of prediction servers of HLA-I binding peptides, their URLs (as of April 2007), and name abbreviations

ID	Servers	Abbreviation	URLs	Prediction algorithm	References
1	BIMAS	BIMAS	[68]	Matrix	[39]
2	HLA Ligand	HLA_LI	[69]	Matrix	[47]
3	IEDB (ANN)	IEDB_ANN	[70]	ANN	[54]
4	IEDB (ARB)	IEDB_ARB	[71]	Matrix	[48]
5	IEDB (SMM)	IEDB_SMM	[72]	Matrix	[49]
6	MAPPP (Bimas)	MAPPP_B	[73]	Matrix	[43]
7	MAPPP (SYFPEITHI)	MAPPP_S	[74]	Matrix	[43]
8	MHC Binder Prediction	MHC_BP	[75]	Matrix	-
9	MHC-BPS	MHC_BPS	[76]	SVM	[55]
10	MHC-I (Multiple matrix)	MHCI_MM	[77]	Structure-based model	[60]
11	MHC-I (Single matrix)	MHCI_SM	[78]	Structure-based model	[60]
12	MHCPred (Interactions)	MHCP_I	[79]	Partial least square	[61]
13	MHCPred (Amino Acids)	MHCP_AA	[80]	Partial least square	[61]
14	MULTIPRED (ANN)	MULTI_ANN	[81]	ANN	[52]
15	MULTIPRED (HMM)	MULTI_HMM	[82]	HMM	[52]
16	MULTIPRED (SVM)	MULTI_SVM	[83]	SVM	[53]
17	NetMHC (ANN)	NETM_ANN	[84]	ANN	[51]
18	NetMHC (Weight Matrix)	NETM_WM	[85]	Matrix	[44]
19	nHLAPred (ANNPred)	NHP_ANN	[86]	ANN	[53]
20	nHLAPred (ComPred)	NHP_CP	[87]	ANN and Matrix	[53]
21	PepDist	PEPDIST	[88]	distance function	[57]
22	PeptideCheck (Matrix)	PEPC_M	[89]	Matrix	[41]
23	Predep	PREDEP	[90]	Structure-based model	[57]
24	ProPred1	PROPRED	[91]	Matrix	[42]
25	Rankpep	RANKPEP	[92]	Matrix	[41]
26	SMM	SMM	[93]	Matrix	[50]
27	SVMHC (MHCPEP)	SVMHC_M	[94]	SVM	[56]
28	SVMHC (SYFPEITHI)	SVMHC_S	[95]	SVM	[56]
29	SVRMHC	SVRMHC	[96]	SVM	[57]
30	SYFPEITHI	SYFPEITHI	[97]	Matrix	[40]

ISSN: 1471-2172