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Table 4 List of prediction servers of HLA-I binding peptides, their URLs (as of April 2007), and name abbreviations

From: Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

ID Servers Abbreviation URLs Prediction algorithm References
1 BIMAS BIMAS [68] Matrix [39]
2 HLA Ligand HLA_LI [69] Matrix [47]
3 IEDB (ANN) IEDB_ANN [70] ANN [54]
4 IEDB (ARB) IEDB_ARB [71] Matrix [48]
5 IEDB (SMM) IEDB_SMM [72] Matrix [49]
6 MAPPP (Bimas) MAPPP_B [73] Matrix [43]
7 MAPPP (SYFPEITHI) MAPPP_S [74] Matrix [43]
8 MHC Binder Prediction MHC_BP [75] Matrix -
9 MHC-BPS MHC_BPS [76] SVM [55]
10 MHC-I (Multiple matrix) MHCI_MM [77] Structure-based model [60]
11 MHC-I (Single matrix) MHCI_SM [78] Structure-based model [60]
12 MHCPred (Interactions) MHCP_I [79] Partial least square [61]
13 MHCPred (Amino Acids) MHCP_AA [80] Partial least square [61]
14 MULTIPRED (ANN) MULTI_ANN [81] ANN [52]
15 MULTIPRED (HMM) MULTI_HMM [82] HMM [52]
16 MULTIPRED (SVM) MULTI_SVM [83] SVM [53]
17 NetMHC (ANN) NETM_ANN [84] ANN [51]
18 NetMHC (Weight Matrix) NETM_WM [85] Matrix [44]
19 nHLAPred (ANNPred) NHP_ANN [86] ANN [53]
20 nHLAPred (ComPred) NHP_CP [87] ANN and Matrix [53]
21 PepDist PEPDIST [88] distance function [57]
22 PeptideCheck (Matrix) PEPC_M [89] Matrix [41]
23 Predep PREDEP [90] Structure-based model [57]
24 ProPred1 PROPRED [91] Matrix [42]
25 Rankpep RANKPEP [92] Matrix [41]
26 SMM SMM [93] Matrix [50]
27 SVMHC (MHCPEP) SVMHC_M [94] SVM [56]
28 SVMHC (SYFPEITHI) SVMHC_S [95] SVM [56]
29 SVRMHC SVRMHC [96] SVM [57]
30 SYFPEITHI SYFPEITHI [97] Matrix [40]