Table 1 List of tools and two workflows (igBLAST- or IMGT-ImmuneRepertoire) implemented in IGGalaxy to analyse the IgH repertoire
Tool name | Description |
|---|---|
igBLASTn | Galaxy wrapper for the igBLASTn executable |
igBLAST Report Parser | Parsing igBLASTn report |
IMGT Loader | Converting IMGT output (a zip file) into our proprietary format. |
Experimental Design | Merging multiple BLAST or IMGT/H files and creating an experimental design |
Report | Plotting the merged data Plotting the merged data Creating a graph of the merged reports |
igBLASTn ImmuneRepertoire | Automatically runs all the tools needed for a repertoire analysis with igBLASTn |
IMGT ImmuneRepertoire | Automatically runs all the tools needed for a repertoire analysis with output from IMGT (zip files). |
IMGT Convert | Converting the 1_, 5_ and 6_ files |